Orhan Karsligil's Ideas, Thoughts and Collection of Resources

Useful Links

I am planning to change this post regularly to capture links. I might
add them to the comments and then incorporate them into categories in
the post. The categories might change and I might need to incorporate a
different format at some point, but for now it should be enough. Please
add usefull sites into the comments and please add some detail what
that link is for.



General search engine

Google Scholar
Search for papers

Search for papers and citations

Search for papers

Preview Seek
General search with categories

Protein Structures
A tutorial on protein structures

Antimic. Peptide DB
Antimicrobial Peptide database
with additional resources on


Post to CiteULike
ThinkFree Office Online
Writely - The Web Word Processor
CiteULike: okarsligil's library

Weird Science

Global Consciousness Project -- consciousness, group consciousness, mind
On-Line Encyclopedia of Integer Sequences (Look...
Deniz Yuret's Math Problems


The Math Forum - Ask Dr. Math
Institute for Systems Biology: Home
San Diego Supercomputer Center: Delivering Cyberinfrastructure
MIT OpenCourseWare | OCW Home
eFunda: The Ultimate Online Reference for Engineers
Free Programming and Computer Science Books
Textbook Revolution
Dictionary of Algorithms


FileForum | TeXnicCenter
Free Source Code Version Control Software (Revision Control Software) (
Cytoscape: Analyzing and Visualizing Biological Network Data
The BUGS Project - Bayesian inference Using Gibbs Sampling
EndNote - Introductory Tutorial for EndNote7
Xd3d home page
The Knowledgebase and Analytical Tools of Bioinformatics
Bioinformatics.Org: Molecular Linux
bioknoppix portal - Welcome to bioknoppix home

Paper Search

Computer and Information Science Papers CiteSeer Publications ResearchIndex e-Print archive
Google Scholar
Computer and Information Science Papers CiteSeer Publications ResearchIndex

Online Articles

Queue - Hitchhiker's Guide to Biomorphic Software - Discover how
nature's most successful systems can work to inspire your software.

Bioinformatics Factsheet
To read during Protein Structure (Block 4).
Bioinformatics Introduction
How to Think Like a Computer Scientist: Learning with Python

Online Courses

OpenCourseWare | Electrical Engineering and Computer Science | 6.092
Bioinformatics and Proteomics, January (IAP) 2005 | Home

MIT OpenCourseWare | Sloan School of Management | 15.062 Data Mining, Spring 2003 | Lecture Notes
MIT OpenCourseWare | Biology | 7.012 Introduction to Biology, Fall 2004 | Video Lectures
MIT OpenCourseWare | Mathematics | 18.417 Introduction to Computational Molecular Biology, Fall 2004 | Home
MIT OpenCourseWare | Biology | 7.91J Foundations of Computational and Systems Biology, Spring 2004 | Home
Game Theory .net - Resources for Learning and Teaching Strategy for Business and Life
The Biology Project
Serafim Batzoglou's Website
cause, chance and Bayesian statistics - Bayes theory for conditional and marginal probabilities
Bayes Statistics [ISyE 8843] Home Page
Greg Butler: Bioinformatics Algorithms Course



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